Return to search results Title: The Xenopus animal cap transcriptome: building a mucociliary epithelium.

Summary

Here we investigate dynamics of the RNA landscape during formation of the Xenopus tropicalis larval epidermis. To obtain RNA expression data, we used ectodermal explants (Animal Caps), which differentiate autonomously into a ciliated epidermis, highly related to the one in human airways. Animal caps were harvested at the gastrula neurula and tailbud stage.

Contributors: Pawel Smialowski, Alessandro Angerilli, Ralph Rupp

Experiment Type: Transcriptomic analysis of 3 developmental stages of embryonic epidermis development in Xenopus tropicalis. We looked at gene´s expression and splicing isoforms expression

Article: XB-ART-55254, PubMed

Source: NCBI GEO, Xenbase Download

Sample	View		GSMs	Assay Type
animal cap explant - NF10.5 GSM3024606  RNA-Seq Xtr   [-] [+] Background: Xtr.inbred Manipulations: Manipulation Type Reagent Target Gene Stage Treatment Area explant   NF stage 8 animal cap Conditions: Tissue Assay Stages ChIP Antibody animal cap NF stage 10.5   animal cap explant - NF16 GSM3024607  RNA-Seq Xtr   [-] [+] Background: Xtr.inbred Manipulations: Manipulation Type Reagent Target Gene Stage Treatment Area explant   NF stage 8 animal cap Conditions: Tissue Assay Stages ChIP Antibody animal cap NF stage 16   animal cap explant - NF24 GSM3024608  RNA-Seq Xtr   [-] [+] Background: Xtr.inbred Manipulations: Manipulation Type Reagent Target Gene Stage Treatment Area explant   NF stage 8 animal cap Conditions: Tissue Assay Stages ChIP Antibody animal cap NF stage 24

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