Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly.
We suggest using a current version of Chrome,
FireFox, or Safari.
Genes Dev
2005 Mar 15;196:677-82. doi: 10.1101/gad.1265205.
Show Gene links
Show Anatomy links
Replication-independent core histone dynamics at transcriptionally active loci in vivo.
Thiriet C, Hayes JJ.
???displayArticle.abstract???
We used a novel labeling technique in the naturally synchronous organism Physarum polycephalum to examine the fate of core histones in G2 phase. We find rapid exchange of H2A/H2B dimers with free pools that is greatly diminished by treatment of the cells with alpha-amanitin. This exchange is enhanced in pol II-coding sequences compared with extragenic regions or inactive loci. In contrast, H3/H4 tetramers exhibit far lower levels of exchange in the pol II-transcribed genes tested, suggesting that tetramer exchange occurs via a distinct mechanism. However, we find that transcribed regions of the ribosomal RNA gene loci exhibit rapid exchange of H3/H4 tetramers. Thus, our data show that the majority of the pol II transcription-dependent histone exchange is due to elongation in vivo rather than promoter remodeling or other pol II-dependent alterations in promoter structure and, in contrast to pol I, pol II transcription through nucleosomes in vivo causes facile exchange of both H2A/H2B dimers while allowing conservation of epigenetic "marks" and other post-translational modifications on H3 and H4.
???displayArticle.pubmedLink???
15769942 ???displayArticle.pmcLink???PMC1065721 ???displayArticle.link???Genes Dev ???displayArticle.grants???[+]
Ahmad,
The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.
2002, Pubmed
Ahmad,
The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.
2002,
Pubmed Baer,
Eukaryotic RNA polymerase II binds to nucleosome cores from transcribed genes.
1983,
Pubmed Belotserkovskaya,
FACT facilitates transcription-dependent nucleosome alteration.
2003,
Pubmed Bénard,
Site-specific initiation of DNA replication within the non-transcribed spacer of Physarum rDNA.
1995,
Pubmed Boeger,
Nucleosomes unfold completely at a transcriptionally active promoter.
2003,
Pubmed Bradbury,
Molecular basis of control of mitotic cell division in eukaryotes.
1974,
Pubmed Bruno,
Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities.
2003,
Pubmed
,
Xenbase Bushnell,
Structural basis of transcription: alpha-amanitin-RNA polymerase II cocrystal at 2.8 A resolution.
2002,
Pubmed Carrino,
Transcription of alpha-tubulin and histone H4 genes begins at the same point in the Physarum cell cycle.
1986,
Pubmed Cosma,
Ordered recruitment: gene-specific mechanism of transcription activation.
2002,
Pubmed Hecht,
Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction.
1999,
Pubmed Hendzel,
Nucleosomal histones of transcriptionally active/competent chromatin preferentially exchange with newly synthesized histones in quiescent chicken erythrocytes.
1990,
Pubmed Jackson,
Histone synthesis and deposition in the G1 and S phases of hepatoma tissue culture cells.
1985,
Pubmed Keene,
DNase I hypersensitive sites in Drosophila chromatin occur at the 5' ends of regions of transcription.
1981,
Pubmed Kimura,
Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.
2001,
Pubmed Kireeva,
Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.
2002,
Pubmed Lee,
Evidence for nucleosome depletion at active regulatory regions genome-wide.
2004,
Pubmed Loidl,
Histone synthesis during the cell cycle of Physarum polycephalum. Synthesis of different histone species is not under a common regulatory control.
1987,
Pubmed Lusser,
Chromatin remodeling by ATP-dependent molecular machines.
2003,
Pubmed Malik,
Phylogenomics of the nucleosome.
2003,
Pubmed Maric,
Developmentally regulated usage of Physarum DNA replication origins.
2003,
Pubmed McKittrick,
Histone H3.3 is enriched in covalent modifications associated with active chromatin.
2004,
Pubmed Mello,
The ins and outs of nucleosome assembly.
2001,
Pubmed Narlikar,
Cooperation between complexes that regulate chromatin structure and transcription.
2002,
Pubmed Nothacker,
A method for isolation of nuclei containing undegraded RNA from RNAase-rich plasmodia of Physarum polycephalum.
1988,
Pubmed Orphanides,
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.
1999,
Pubmed Perry,
Genomic organization and nucleotide sequence of two distinct histone gene clusters from Xenopus laevis. Identification of novel conserved upstream sequence elements.
1985,
Pubmed
,
Xenbase Perry,
Analysis of nucleosome assembly and histone exchange using antibodies specific for acetylated H4.
1993,
Pubmed
,
Xenbase Pierron,
More evidence for replication-transcription-coupling in Physarum polycephalum.
1980,
Pubmed Prior,
Incorporation of exogenous pyrene-labeled histone into Physarum chromatin: a system for studying changes in nucleosomes assembled in vivo.
1980,
Pubmed Reinke,
Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.
2003,
Pubmed Roth,
Histone acetyltransferases.
2001,
Pubmed Sathyanarayana,
RNA polymerase-specific nucleosome disruption by transcription in vivo.
1999,
Pubmed Saunders,
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo.
2003,
Pubmed Schwabish,
Evidence for eviction and rapid deposition of histones upon transcriptional elongation by RNA polymerase II.
2004,
Pubmed Thiriet,
Analysis of chromatin assembled in vivo using exogenous histones in Physarum polycephalum.
2004,
Pubmed Thiriet,
A novel labeling technique reveals a function for histone H2A/H2B dimer tail domains in chromatin assembly in vivo.
2001,
Pubmed Thiriet,
Chromatin remodeling by cell cycle stage-specific extracts from Physarum polycephalum.
1999,
Pubmed Thiriet,
Histone proteins in vivo: cell-cycle-dependent physiological effects of exogenous linker histones incorporated into Physarum polycephalum.
1999,
Pubmed Waterborg,
Intranuclear localization of histone acetylation in Physarum polycephalum and the structure of functionally active chromatin.
1983,
Pubmed Wu,
The 5' ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I.
1980,
Pubmed Wu,
The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity.
1979,
Pubmed Zhang,
Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails.
2001,
Pubmed