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XB-GRNA-23659709
gRNA Name:
pgat gRNA2
Synonyms: pat-T2
Genomic Target: pgat
PAM Sequence: tgg
Sequence: 5' GGCACATTCTGATGCAGCAG 3'
Synonyms: pat-T2
Genomic Target: pgat
PAM Sequence: tgg
Sequence: 5' GGCACATTCTGATGCAGCAG 3'
| Genomic Target | tropicalis | laevis.L | |||||
| Identities | 20/20 | 18/20 | |||||
genome
gRNA
|
5' CTGCTGCATCAGAATGTGCC 3' |||||||||||||||||||| 3' GACGACGTAGTCTTACACGG 5' |
5' CTGCTGCATCAAAATGTGCG 3' ||||||||||| ||||||| 3' GACGACGTAGTCTTACACGG 5' |
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| Genomic Alignments |
Position | Identity | Strand | Target | Genomic Target | ||
| laevis 10.1 | Chr5L:149717374..149717393 | 18/20 | Sense | target | pgat.L | ||
| Chr3S:5831534..5831553 | 18/20 | Sense | off-target | erc1.S | |||
| Chr2S:47828018..47828037 | 18/20 | Antisense | off-target | kdm6a.S | |||
| Chr3S:95150404..95150423 | 17/20 | Sense | off-target | mon2.S | |||
| Chr4L:149141515..149141534 | 17/20 | Antisense | off-target | cfap20dc.L | |||
| Chr2L:90587086..90587105 | 17/20 | Antisense | off-target | LOC108708252 | |||
| Chr2S:165601689..165601708 | 17/20 | Sense | off-target | LOC108710053 | |||
| Chr1L:201437280..201437299 | 16/20 | Sense | off-target | aggf1.L | |||
| Chr4L:26966022..26966041 | 16/20 | Sense | off-target | flrt1.L | |||
| Chr4L:26966022..26966041 | 16/20 | Antisense | off-target | macrod1.L | |||
| Chr1L:206687349..206687368 | 19/20 | unknown | |||||
| Chr3L:45204804..45204823 | 17/20 | unknown | |||||
| Chr7S:83595385..83595404 | 17/20 | unknown | |||||
| Chr2L:140693020..140693039 | 17/20 | unknown | |||||
| Chr3L:53144675..53144694 | 16/20 | unknown | |||||
| Chr5L:121267687..121267706 | 16/20 | unknown | |||||
| Chr5L:73892340..73892359 | 16/20 | unknown | |||||
| Chr8S:73465208..73465227 | 16/20 | unknown | |||||
| Chr9_10S:58448256..58448275 | 16/20 | unknown | tropicalis 10.0 | Chr5:138707081..138707100 | 20/20 | Sense | target | pgat |
| Chr6:9930963..9930982 | 18/20 | Antisense | off-target | arf5 | |||
| Chr1:124384867..124384886 | 17/20 | Sense | off-target | nfib | |||
| Chr1:118782102..118782121 | 17/20 | Antisense | off-target | adamtsl1 | |||
| Chr5:124726883..124726902 | 16/20 | unknown | |||||
| Chr7:89221316..89221335 | 16/20 | unknown | |||||
| Publications | |||||||
| ???morpholino.displaySummary.papersFirst??? |
Efficient RNA/Cas9-mediated genome editing in Xenopus tropicalis., Development 2014 |
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| ???morpholino.displaySummary.papersRecent??? | |||||||
| ???morpholino.displaySummary.papersAll??? | |||||||
